Gold standard positive gene pairs

Set	Description	# Genes	# Links
HumanNet-GSP	Gold standard positive gene pairs for HumanNet v3	8,779	260,962

Integrated Networks

Network	Description	# Genes (Genome coverage)	# Links
HumanNet-XC	Functional gene network extended network by co-citation	18,462 (99.11%)	1,125,494
HumanNet-FN	Functional gene network (CX+DB+DP+GI+GN+PG+PI)	18,459 (99.10%)	977,495

Component Networks

Network	Description	# Genes	# Links
CC	Co-functional links by co-citation	18,300	1,081,518
CX	Co-functional links by co-expression	12,180	81,064
DB	Co-functional links by pathway database	8,540	135,327
DP	Co-functional links by protein domain profile associations	12,700	73,414
GI	Co-functional links by genetic interaction	10,478	174,509
GN	Co-functional links by gene neighborhood	2,339	97,565
PG	Co-functional links by phylogenetic profile associations	2,126	16,465
PI	Protein-protein interaction network	17,849	633,460